PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S02476.20
Common NameJCGZ_20670, LOC105645883
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 227aa    MW: 25366.2 Da    PI: 5.065
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S02476.20genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-1759108255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++GVr +  + +Wv+e+r+p   +k++r++lg++ t+e+Aa+a++ a+++l+g
  Jcr4S02476.20  59 IFRGVRKRN-NEKWVCELREP---NKKTRIWLGTYPTPEMAARAHDVAALALRG 108
                    59****888.8*********8...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.34E-2958118No hitNo description
PfamPF008471.4E-1258108IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.3E-3059118IPR001471AP2/ERF domain
PROSITE profilePS5103221.03559116IPR001471AP2/ERF domain
SMARTSM003804.9E-2959122IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2059118IPR016177DNA-binding domain
PRINTSPR003671.2E-66071IPR001471AP2/ERF domain
PRINTSPR003671.2E-68298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSSQFSDPYP VLEKQDSDTS TGTASLQRSA HSDEEVLLAT SYPKKRAGRR IFKETRHPIF  60
RGVRKRNNEK WVCELREPNK KTRIWLGTYP TPEMAARAHD VAALALRGKS ACLNFADSSW  120
RLPVPVSKEA QDIRRAAHEA AEMFRSGETE KCGVEYSGEV SSRNSELKQE NDVSYIDEEA  180
VFDMPGLLAN MAEGPLLSPP HYAGGDDGVN WDELEADGEV SLWSFSI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012087006.11e-170PREDICTED: dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ935e-67DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A067K1361e-170A0A067K136_JATCU; Uncharacterized protein
STRINGPOPTR_0001s08720.16e-92(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-57C-repeat/DRE binding factor 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]